Author: Xianding Deng; Wei Gu; Scot Federman; Louis Du Plessis; Oliver Pybus; Nuno Faria; Candace Wang; Guixia Yu; Chao-Yang Pan; Hugo Guevara; Alicia Sotomayor-Gonzalez; Kelsey Zorn; Allan Gopez; Venice Servellita; Elaine Hsu; Steve Miller; Trevor Bedford; Alexander Greninger; Pavitra Roychoudhury; Michael Famulare; Helen Y Chu; Jay Shendure; Lea Starita; Catie Anderson; Karthik Gangavarapu; Mark Zeller; Emily Spencer; Kristian Andersen; Duncan MacCannell; Suxiang Tong; Gregory Armstrong; Clinton Paden; Yan Li; Ying Zhang; Scott Morrow; Matthew Willis; Bela Matyas; Sundari Mase; Olivia Kasirye; Maggie Park; Curtis Chan; Alexander Yu; Shua Chai; Elsa Villarino; Brandon Bonin; Debra Wadford; Charles Y Chiu
Title: A Genomic Survey of SARS-CoV-2 Reveals Multiple Introductions into Northern California without a Predominant Lineage Document date: 2020_3_30
ID: cbc98t7x_48
Snippet: Phylogenetic tree of 342 SARS-CoV2 genomes along with the 29 genomes in this survey. Multiple sequence alignment of all available SARS-CoV-2 genomes in GISAID as of March 22nd, 2020, was performed using MAFFT (24) , followed by tree constructions using PhyML (25) . Viral lineages from California or Washington State are colored, while those outside of California and Washington are shown in gray. (B) A zoomed view of individual phylogenetic cluster.....
Document: Phylogenetic tree of 342 SARS-CoV2 genomes along with the 29 genomes in this survey. Multiple sequence alignment of all available SARS-CoV-2 genomes in GISAID as of March 22nd, 2020, was performed using MAFFT (24) , followed by tree constructions using PhyML (25) . Viral lineages from California or Washington State are colored, while those outside of California and Washington are shown in gray. (B) A zoomed view of individual phylogenetic clusters corresponding to the WA1 lineage (1), Santa Clara County cluster (2) , and Solano County cluster (3).
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