Author: Siying Ye; Chris Cowled; Cheng-Hon Yap; John Stambas
Title: Deep sequencing of primary human lung epithelial cells challenged with H5N1 influenza virus reveals a proviral role for CEACAM1 Document date: 2018_5_17
ID: 6arj2i3m_33
Snippet: The copyright holder for this preprint (which was not peer-reviewed) is the author/funder. . https://doi.org/10.1101/324723 doi: bioRxiv preprint samples into a single reference transcriptome, and Cuffquant was used to obtain per-sample read 446 counts. Cuffdiff was then used to conduct differential expression analysis. All programs were run using 447 recommended parameters, however the reference gtf file provided to cuffmerge was first edited us.....
Document: The copyright holder for this preprint (which was not peer-reviewed) is the author/funder. . https://doi.org/10.1101/324723 doi: bioRxiv preprint samples into a single reference transcriptome, and Cuffquant was used to obtain per-sample read 446 counts. Cuffdiff was then used to conduct differential expression analysis. All programs were run using 447 recommended parameters, however the reference gtf file provided to cuffmerge was first edited using a 448 custom python script to exclude lines containing features other than exon/cds, and contigs other than 449 chromosomes 1-22, X, Y. 450
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