Author: C I Mendes; E Lizarazo; M P Machado; D N Silva; A Tami; M Ramirez; N Couto; J W A Rossen; J A Carriço
Title: DEN-IM: Dengue Virus identification from shotgun and targeted metagenomics Document date: 2019_5_6
ID: 46w17i8r_27
Snippet: 1 . CC-BY 4.0 International license author/funder. It is made available under a The copyright holder for this preprint (which was not peer-reviewed) is the . https://doi.org/10.1101/628073 doi: bioRxiv preprint Figure S3 . Maximum Likelihood inference of the multiple sequence alignment of the 63 DENV-2 complete genomes in the typing dataset. 1067 complete DENV-1 genomes were clustered at 98% nucleotide identity and the representative genomes were.....
Document: 1 . CC-BY 4.0 International license author/funder. It is made available under a The copyright holder for this preprint (which was not peer-reviewed) is the . https://doi.org/10.1101/628073 doi: bioRxiv preprint Figure S3 . Maximum Likelihood inference of the multiple sequence alignment of the 63 DENV-2 complete genomes in the typing dataset. 1067 complete DENV-1 genomes were clustered at 98% nucleotide identity and the representative genomes were aligned with mafft. A maximum likelihood tree was infered with RAxML. The tree is coloured according to genotype (red: genotype I; green: genotype II; blue: genotype III; purple: genotype IV).
Search related documents:
Co phrase search for related documents- complete genome and maximum likelihood tree: 1, 2
- complete genome and nucleotide identity: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47
- complete genome and representative genome: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11
- complete genome and sequence alignment: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17
- genotype IV purple and likelihood tree: 1, 2, 3
- genotype IV purple and Maximum Likelihood inference: 1, 2, 3
- genotype IV purple and maximum likelihood tree: 1, 2, 3
- genotype IV purple and nucleotide identity: 1, 2, 3
- genotype IV purple and sequence alignment: 1, 2, 3
- genotype IV purple and typing dataset: 1, 2, 3
- likelihood tree and Maximum Likelihood inference: 1, 2, 3, 4, 5
- likelihood tree and maximum likelihood tree: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69
- likelihood tree and nucleotide identity: 1, 2, 3, 4, 5
- likelihood tree and sequence alignment: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14
- likelihood tree and typing dataset: 1, 2, 3, 4
- Maximum Likelihood inference and nucleotide identity: 1, 2, 3
- Maximum Likelihood inference and sequence alignment: 1, 2, 3, 4
- Maximum Likelihood inference and typing dataset: 1, 2, 3
- maximum likelihood tree and nucleotide identity: 1, 2, 3, 4, 5
Co phrase search for related documents, hyperlinks ordered by date