Selected article for: "likelihood tree and typing dataset"
Author: C I Mendes; E Lizarazo; M P Machado; D N Silva; A Tami; M Ramirez; N Couto; J W A Rossen; J A Carriço
Title: DEN-IM: Dengue Virus identification from shotgun and targeted metagenomics
  • Document date: 2019_5_6
    • ID: 46w17i8r_29
    Snippet: 1 . CC-BY 4.0 International license author/funder. It is made available under a The copyright holder for this preprint (which was not peer-reviewed) is the . https://doi.org/10.1101/628073 doi: bioRxiv preprint Figure S5 . Maximum Likelihood inference of the multiple sequence alignment of the 27 DENV-4 complete genomes in the typing dataset. 320 complete DENV-4 genomes were clustered at 98% nucleotide identity and the representative genomes were .....
    Document: 1 . CC-BY 4.0 International license author/funder. It is made available under a The copyright holder for this preprint (which was not peer-reviewed) is the . https://doi.org/10.1101/628073 doi: bioRxiv preprint Figure S5 . Maximum Likelihood inference of the multiple sequence alignment of the 27 DENV-4 complete genomes in the typing dataset. 320 complete DENV-4 genomes were clustered at 98% nucleotide identity and the representative genomes were aligned with mafft. A maximum likelihood tree was infered with RAxML. The tree is coloured according to genotype (red: genotype I; green: genotype II; blue: genotype III; purple: genotype IV).

    Search related documents:
    Co phrase search for related documents
    • complete genome and maximum likelihood tree: 1, 2
    • complete genome and nucleotide identity: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25
    • complete genome and representative genome: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11
    • complete genome and sequence alignment: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17
    • genotype IV purple and likelihood tree: 1, 2, 3
    • genotype IV purple and Maximum Likelihood inference: 1, 2, 3
    • genotype IV purple and maximum likelihood tree: 1, 2, 3
    • genotype IV purple and nucleotide identity: 1, 2, 3
    • genotype IV purple and sequence alignment: 1, 2, 3
    • genotype IV purple and typing dataset: 1, 2, 3
    • likelihood tree and Maximum Likelihood inference: 1, 2, 3, 4, 5
    • likelihood tree and maximum likelihood tree: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25
    • likelihood tree and nucleotide identity: 1, 2, 3, 4, 5
    • likelihood tree and sequence alignment: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14
    • likelihood tree and typing dataset: 1, 2, 3, 4
    • Maximum Likelihood inference and nucleotide identity: 1, 2, 3
    • Maximum Likelihood inference and sequence alignment: 1, 2, 3, 4
    • Maximum Likelihood inference and typing dataset: 1, 2, 3
    • maximum likelihood tree and nucleotide identity: 1, 2, 3, 4, 5