Author: Jiao Chen; Jiayu Shang; Jianrong Wang; Yanni Sun
Title: A binning tool to reconstruct viral haplotypes from assembled contigs Document date: 2019_7_16
ID: 2basllfv_44
Snippet: According to our methods, the haplotype number estimation only depends on the alignment results of contigs. For all five sets of simulated contigs with different average lengths, the consensus window depth of the 50 longest windows is 5 for all. The histogram of window depth for 5 simulated contig sets is shown in Fig. 3 . It is clear that window depth 5 dominates longest windows. Thus, the estimated number of haplotypes is 5, reflecting the trut.....
Document: According to our methods, the haplotype number estimation only depends on the alignment results of contigs. For all five sets of simulated contigs with different average lengths, the consensus window depth of the 50 longest windows is 5 for all. The histogram of window depth for 5 simulated contig sets is shown in Fig. 3 . It is clear that window depth 5 dominates longest windows. Thus, the estimated number of haplotypes is 5, reflecting the truth for our data sets. In general, the percentage of windows with depth 5 increases with increasing contig lengths.
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