Author: Lars S Jermiin; Renee A Catullo; Barbara R Holland
Title: A new phylogenetic protocol: Dealing with model misspecification and confirmation bias in molecular phylogenetics Document date: 2018_8_27
ID: hr6wfx4g_6
Snippet: Then, a multiple sequence alignment (MSA) method is chosen, often on the basis of prior experience with a specific method. The sequences are then aligned, the aim being to obtain an MSA, wherein homologous characters (i.e., nucleotides or amino acids) are identified and aligned. In practice, it is often necessary to insert gaps between some of the characters of these sequences to obtain an optimal MSA-in some cases, there may be sections of the M.....
Document: Then, a multiple sequence alignment (MSA) method is chosen, often on the basis of prior experience with a specific method. The sequences are then aligned, the aim being to obtain an MSA, wherein homologous characters (i.e., nucleotides or amino acids) are identified and aligned. In practice, it is often necessary to insert gaps between some of the characters of these sequences to obtain an optimal MSA-in some cases, there may be sections of the MSA that cannot be aligned reliably.
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