Selected article for: "FASTA sequence and quality sequence"

Author: Wanda J. Lyon; Zachary K. Smith; Brian Grier; James Baldwin; Clarise R. Starr
Title: Evaluating an Upper Respiratory Disease Panel on the Portable MinION Sequencer
  • Document date: 2018_10_5
  • ID: 3begdfx2_13
    Snippet: Read data were extracted from the native HDF5 format (Fast 5) and converted into FASTA using poretools [25] and sequence reads were assess for quality and trimmed with Nanofilt [9] Quality reads with a q-score lower than 7 were omitted. Illumina reads were trimmed with Trimmomatic 0.36 using the following settings: trim reads: Leading: 3, Trailing: 3, and Sliding Window: 4:15......
    Document: Read data were extracted from the native HDF5 format (Fast 5) and converted into FASTA using poretools [25] and sequence reads were assess for quality and trimmed with Nanofilt [9] Quality reads with a q-score lower than 7 were omitted. Illumina reads were trimmed with Trimmomatic 0.36 using the following settings: trim reads: Leading: 3, Trailing: 3, and Sliding Window: 4:15.

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