Author: Manning, Jessica E.; Bohl, Jennifer A.; Lay, Sreyngim; Chea, Sophana; Sovann, Ly; Sengdoeurn, Yi; Heng, Seng; Vuthy, Chan; Kalantar, Katrina; Ahyong, Vida; Tan, Michelle; Sheu, Jonathan; Tato, Cristina M.; DeRisi, Joseph L.; Baril, Laurence; Duong, Veasna; Dussart, Philippe; Karlsson, Erik A.
Title: Rapid metagenomic characterization of a case of imported COVID-19 in Cambodia Cord-id: fu3cl7lq Document date: 2020_3_5
ID: fu3cl7lq
Snippet: Rapid production and publication of pathogen genome sequences during emerging disease outbreaks provide crucial public health information. In resource-limited settings, especially near an outbreak epicenter, conventional deep sequencing or bioinformatics are often challenging. Here we successfully used metagenomic next generation sequencing on an iSeq100 Illumina platform paired with an open-source bioinformatics pipeline to quickly characterize Cambodia’s first case of COVID-2019.
Document: Rapid production and publication of pathogen genome sequences during emerging disease outbreaks provide crucial public health information. In resource-limited settings, especially near an outbreak epicenter, conventional deep sequencing or bioinformatics are often challenging. Here we successfully used metagenomic next generation sequencing on an iSeq100 Illumina platform paired with an open-source bioinformatics pipeline to quickly characterize Cambodia’s first case of COVID-2019.
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