Author: Maciej F Boni; Philippe Lemey; Xiaowei Jiang; Tommy Tsan-Yuk Lam; Blair Perry; Todd Castoe; Andrew Rambaut; David L Robertson
Title: Evolutionary origins of the SARS-CoV-2 sarbecovirus lineage responsible for the COVID-19 pandemic Document date: 2020_3_31
ID: h2uc7ria_11
Snippet: Despite this high frequency of recombination among bat viruses, the 'block-like' nature of the genome permits retrieval of a clean sub-alignment for phylogenetic analysis. Conservatively, we can combine three >2kb BFRs identified above into a putative non-recombining region 1 (NRR1), after removing five sequences that appear to be recombinants and two small sub-regions of the longer region (nucleotides 13291-19628) ......
Document: Despite this high frequency of recombination among bat viruses, the 'block-like' nature of the genome permits retrieval of a clean sub-alignment for phylogenetic analysis. Conservatively, we can combine three >2kb BFRs identified above into a putative non-recombining region 1 (NRR1), after removing five sequences that appear to be recombinants and two small sub-regions of the longer region (nucleotides 13291-19628) .
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