Selected article for: "count read and read count"

Author: Anna Shcherbina; Darrell O. Ricke; Nelson Chiu
Title: Evaluating performance of metagenomic characterization algorithms using in silico datasets generated with FASTQSim
  • Document date: 2016_3_31
  • ID: csokkcqq_32
    Snippet: The algorithms diverged in runtime by several orders of magnitude ( In addition to its high speed, MetaPhlAn also achieved the highest accuracy, defined as ratio of true with fewer than 100 reads assigned to each. Kraken has a similar false positive profile; it reports 1,266 218 species that account for <1% of the reads in the dataset. MetaCV reports 2,998 false organisms with 219 low read count, and LMAT reports 1,118 species that account for le.....
    Document: The algorithms diverged in runtime by several orders of magnitude ( In addition to its high speed, MetaPhlAn also achieved the highest accuracy, defined as ratio of true with fewer than 100 reads assigned to each. Kraken has a similar false positive profile; it reports 1,266 218 species that account for <1% of the reads in the dataset. MetaCV reports 2,998 false organisms with 219 low read count, and LMAT reports 1,118 species that account for less than 0.01% of the reads. 220

    Search related documents:
    Co phrase search for related documents
    • false positive profile and positive profile: 1
    • high accuracy and magnitude order: 1, 2, 3
    • high accuracy and positive profile: 1
    • high speed and magnitude order: 1, 2