Author: Jiao-Mei Huang; Syed Sajid Jan; Xiaobin Wei; Yi Wan; Songying Ouyang
Title: Evidence of the Recombinant Origin and Ongoing Mutations in Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Document date: 2020_3_17
ID: fw4pmaoc_18
Snippet: Raw pair-end reads of pangolin dataset sample (SRR10168377) obtained from NCBI were filtered with bbmap.sh (v38.79) by removing adaptors, trimming low quality reads from both sides (quality value < 20), and reads length less than 50 nt were ignored. Host reference genome (pangolin ManJav1.0, GCF_001685135.1) contaminant reads were removed by bowtie2 (v2.3.5.1) [13] . Pangolin CoV genome fragments were assembled via MEGAHIT (v1.2.9) (Li et al., 20.....
Document: Raw pair-end reads of pangolin dataset sample (SRR10168377) obtained from NCBI were filtered with bbmap.sh (v38.79) by removing adaptors, trimming low quality reads from both sides (quality value < 20), and reads length less than 50 nt were ignored. Host reference genome (pangolin ManJav1.0, GCF_001685135.1) contaminant reads were removed by bowtie2 (v2.3.5.1) [13] . Pangolin CoV genome fragments were assembled via MEGAHIT (v1.2.9) (Li et al., 2015) .
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