Author: Maciej F Boni; Philippe Lemey; Xiaowei Jiang; Tommy Tsan-Yuk Lam; Blair Perry; Todd Castoe; Andrew Rambaut; David L Robertson
Title: Evolutionary origins of the SARS-CoV-2 sarbecovirus lineage responsible for the COVID-19 pandemic Document date: 2020_3_31
ID: h2uc7ria_51
Snippet: In our analyses of the sarbecovirus data sets, we incorporated the uncertainty of the sampling dates when exact dates were not available. To estimate nonsynonymous over synonymous rate ratios for the concatenated coding genes, we used the empirical Bayes 'Renaissance counting' procedure (Lemey et al., 2012) . Temporal signal was tested using a recently developed marginal likelihood estimation procedure (Duchene et al., 2019) ( Table S1) ......
Document: In our analyses of the sarbecovirus data sets, we incorporated the uncertainty of the sampling dates when exact dates were not available. To estimate nonsynonymous over synonymous rate ratios for the concatenated coding genes, we used the empirical Bayes 'Renaissance counting' procedure (Lemey et al., 2012) . Temporal signal was tested using a recently developed marginal likelihood estimation procedure (Duchene et al., 2019) ( Table S1) .
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