Selected article for: "Crystal structure and protomer structure"
Author: Mert Gur; Elhan Taka; Sema Zeynep Yilmaz; Ceren Kilinc; Umut Aktas; Mert Golcuk
Title: Exploring Conformational Transition of 2019 Novel Coronavirus Spike Glycoprotein Between Its Closed and Open States Using Molecular Dynamics Simulations
  • Document date: 2020_4_19
    • ID: o14tj8fi_16
    Snippet: Protomer conformations sampled in MD simulations were aligned with protomer B of the open state crystal structure using the Cα atoms of the S2 domain helices and beta sheets (Fig. S1 ). Upon alignment, the covariance matrix was constructed using the 3x459 dimensional configuration vector composed of the instantaneous Cα atom coordinates of the RBD and S2 domain helices and beta sheets as follows,.....
    Document: Protomer conformations sampled in MD simulations were aligned with protomer B of the open state crystal structure using the Cα atoms of the S2 domain helices and beta sheets (Fig. S1 ). Upon alignment, the covariance matrix was constructed using the 3x459 dimensional configuration vector composed of the instantaneous Cα atom coordinates of the RBD and S2 domain helices and beta sheets as follows,

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