Author: Lara Urban; Andre Holzer; J Jotautas Baronas; Michael Hall; Philipp Braeuninger-Weimer; Michael J Scherm; Daniel J Kunz; Surangi N Perera; Daniel E Martin-Herranz; Edward T Tipper; Susannah J Salter; Maximilian R Stammnitz
Title: Freshwater monitoring by nanopore sequencing Document date: 2020_2_7
ID: 77nsidzc_15
Snippet: In general, much of the taxonomic variation across all samples was caused by sample April-7 (PC1 explains 27. Using multiple sequence alignments between nanopore reads and pathogenic species references, we further resolved the phylogenies of three common potentially pathogenic genera occurring in our river samples, Pseudomonas, Legionella and Salmonella (Extended Data Figure 7 ; Methods). While Legionella and Salmonella diversities only presented.....
Document: In general, much of the taxonomic variation across all samples was caused by sample April-7 (PC1 explains 27. Using multiple sequence alignments between nanopore reads and pathogenic species references, we further resolved the phylogenies of three common potentially pathogenic genera occurring in our river samples, Pseudomonas, Legionella and Salmonella (Extended Data Figure 7 ; Methods). While Legionella and Salmonella diversities only presented negligible levels of known harmful species, a cluster of sequencing reads in downstream sections indicated a low abundance of the opportunistic, environmental pathogen Pseudomonas aeruginosa (Extended Data Figure 7 ).
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