Author: Lara Urban; Andre Holzer; J Jotautas Baronas; Michael Hall; Philipp Braeuninger-Weimer; Michael J Scherm; Daniel J Kunz; Surangi N Perera; Daniel E Martin-Herranz; Edward T Tipper; Susannah J Salter; Maximilian R Stammnitz
Title: Freshwater monitoring by nanopore sequencing Document date: 2020_2_7
ID: 77nsidzc_52
Snippet: We used nanopore sequencing data from our mock community and freshwater amplicons for benchmarking the classification tools. We therefore subsampled (a) 10,000 reads from each of the three mock community sequencing replicates (section 1.4), and (b) 10,000 reads from an aquatic sample (April-8; three random draws served as replicates). We then used the above twelve classification tools to classify these reads against the same database,.....
Document: We used nanopore sequencing data from our mock community and freshwater amplicons for benchmarking the classification tools. We therefore subsampled (a) 10,000 reads from each of the three mock community sequencing replicates (section 1.4), and (b) 10,000 reads from an aquatic sample (April-8; three random draws served as replicates). We then used the above twelve classification tools to classify these reads against the same database,
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