Author: Enrico Lavezzo; Michele Berselli; Ilaria Frasson; Rosalba Perrone; Giorgio Palù; Alessandra R. Brazzale; Sara N. Richter; Stefano Toppo
Title: G-quadruplex forming sequences in the genome of all known human viruses: a comprehensive guide Document date: 2018_6_11
ID: c3lmmll6_77
Snippet: Genome coordinates were extracted for coding sequences ('CDS'), repeat regions ('repeat_region'), 5'-and 3'-untranslated (UTR) and promoter regions. Given the annotation inconsistency of promoters and UTRs, two new feature categories were created, 5' -and 3' regulatory regions that were defined by exploiting the annotation of genes and CDSs. We calculated boundaries for genes in the positive strand of viral genomes as follows: 5'regulatory = Sgen.....
Document: Genome coordinates were extracted for coding sequences ('CDS'), repeat regions ('repeat_region'), 5'-and 3'-untranslated (UTR) and promoter regions. Given the annotation inconsistency of promoters and UTRs, two new feature categories were created, 5' -and 3' regulatory regions that were defined by exploiting the annotation of genes and CDSs. We calculated boundaries for genes in the positive strand of viral genomes as follows: 5'regulatory = Sgene -Scds; 3'regulatory = Ecds -Egene. For the genes in the negative strand of viral genomes we defined: 5'regulatory = Scds -Sgene; 3'regulatory = Egene -Ecds. Sgene, Scds, Egene and Ecds are the Start (S) and End (E) of genes and CDSs as extracted from the author/funder. All rights reserved. No reuse allowed without permission.
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