Author: Sara Cleemput; Wim Dumon; Vagner Fonseca; Wasim Abdool Karim; Marta Giovanetti; Luiz Carlos Alcantara; Koen Deforche; Tulio de Oliveira
Title: Genome Detective Coronavirus Typing Tool for rapid identification and characterization of novel coronavirus genomes Document date: 2020_2_2
ID: gxstlzuk_3
Snippet: The result of the phylogenetic and mutational analysis performed by AGA is available in a detailed report. This report contains an interactive phylogenetic tree and genome mapper (Supplementary Figure 1) . It also presents the virus species and cluster assignments and a detailed table that provides information about open reading frames (ORFs), CDS and proteins. This table can be expanded to show nucleotide and amino acid mutations that differenti.....
Document: The result of the phylogenetic and mutational analysis performed by AGA is available in a detailed report. This report contains an interactive phylogenetic tree and genome mapper (Supplementary Figure 1) . It also presents the virus species and cluster assignments and a detailed table that provides information about open reading frames (ORFs), CDS and proteins. This table can be expanded to show nucleotide and amino acid mutations that differentiate a query sequence from their species RefSeq or from a sequence in the phylogenetic reference dataset. All results can be exported to a variety of file formats (XML, CSV, Excel, Nexus or FASTA).
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