Author: Tsuyoshi Sekizuka; Kentaro Itokawa; Tsutomu Kageyama; Shinji Saito; Ikuyo Takayama; Hideki Asanuma; Nao Naganori; Rina Tanaka; Masanori Hashino; Takuri Takahashi; Hajime Kamiya; Takuya Yamagishi; Kensaku Kakimoto; Motoi Suzuki; Hideki Hasegawa; Takaji Wakita; Makoto Kuroda
Title: Haplotype networks of SARS-CoV-2 infections in the Diamond Princess cruise ship outbreak Document date: 2020_3_27
ID: 7vuejy26_16
Snippet: A) Box plots of the Cq value from RT-qPCR assays that either successfully resulted in whole 5 genome sequencing or incomplete sequencing. A Cq of at least 32 (~300 viral copy) is favorable for obtaining the whole genome sequence by PrimalSeq. B) The genome position of genetic variations found among DP isolates compared with the isolate Wuhan-Hu-1 (MN908947). C) The detected nucleotide transition and transversion in all GISAID available SARS-CoV-2.....
Document: A) Box plots of the Cq value from RT-qPCR assays that either successfully resulted in whole 5 genome sequencing or incomplete sequencing. A Cq of at least 32 (~300 viral copy) is favorable for obtaining the whole genome sequence by PrimalSeq. B) The genome position of genetic variations found among DP isolates compared with the isolate Wuhan-Hu-1 (MN908947). C) The detected nucleotide transition and transversion in all GISAID available SARS-CoV-2 genomes (n= 248, see Supplementary Table S3 . Updated on March 10, 2020) and DP isolates 10 (n=73) compared with the isolate Wuhan-Hu-1 (MN908947). D) The detected ratio of synonymous/non-synonymous mutations on coding sequences or intergenic regions in all GISAID available SARS-CoV-2 genomes (n= 248, Updated on March 10, 2020) and DP isolates (n=73) compared with the isolate Wuhan-Hu-1 (MN908947).
Search related documents:
Co phrase search for related documents- genome sequence and intergenic region: 1, 2, 3, 4, 5, 6, 7, 8
- genome sequence and non synonymous mutation: 1, 2, 3, 4, 5
- genome sequence and nucleotide transition: 1, 2
- genome sequence and RT qPCR assay: 1
- genome sequence and SARS genome: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75, 76, 77, 78
- genome sequence and viral copy: 1, 2, 3, 4, 5, 6, 7, 8
- genome sequencing and incomplete sequencing: 1, 2
- genome sequencing and intergenic region: 1, 2, 3, 4
- genome sequencing and non synonymous mutation: 1, 2
- genome sequencing and RT qPCR assay: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10
- genome sequencing and SARS genome: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54, 55, 56, 57, 58, 59, 60, 61, 62, 63, 64, 65, 66, 67, 68, 69, 70, 71, 72, 73, 74, 75
- genome sequencing and viral copy: 1, 2, 3, 4, 5, 6, 7
- incomplete sequencing and SARS genome: 1
- intergenic region and SARS genome: 1, 2, 3
- non synonymous mutation and SARS genome: 1, 2, 3, 4, 5, 6
- nucleotide transition and SARS genome: 1, 2, 3, 4
- RT qPCR assay and SARS genome: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11
- RT qPCR assay and viral copy: 1, 2, 3, 4
- SARS genome and viral copy: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11
Co phrase search for related documents, hyperlinks ordered by date