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Author: Moore, Shona C; Penrice-Randal, Rebekah; Alruwaili, Muhannad; Dong, Xiaofeng; Pullan, Steven T; Carter, Daniel; Bewley, Kevin; Zhao, Qin; Sun, Yani; Hartley, Catherine; Zhou, En-min; Solomon, Tom; Beadsworth, Michael B. J.; Cruise, James; Bogaert, Debby; Crook, Derrick W T; Matthews, David A; Davidson, Andrew D.; Mahmood, Zana; Aljabr, Waleed; Druce, Julian; Vipond, Richard T; Ng, Lisa; Renia, Laurent; Openshaw, Peter; Baillie, J Kenneth; Carroll, Miles W; Semple, Calum; Turtle, Lance; Hiscox, Julian Alexander
Title: Amplicon based MinION sequencing of SARS-CoV-2 and metagenomic characterisation of nasopharyngeal swabs from patients with COVID-19
  • Cord-id: nt5sprdh
  • Document date: 2020_3_8
  • ID: nt5sprdh
    Snippet: COVID-19 is a complex disease phenotype where the underlying microbiome could influence morbidity and mortality. Amplicon and metagenomic MinION based sequencing was used to rapidly (within 8 hours) identify SARS-CoV-2 and assess the microbiome in nasopharyngeal swabs obtained from patients with COVID-19 by the ISARIC 4C consortium.
    Document: COVID-19 is a complex disease phenotype where the underlying microbiome could influence morbidity and mortality. Amplicon and metagenomic MinION based sequencing was used to rapidly (within 8 hours) identify SARS-CoV-2 and assess the microbiome in nasopharyngeal swabs obtained from patients with COVID-19 by the ISARIC 4C consortium.

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