Selected article for: "coalescent model and constant population size"
Author: Adrian Egli; Nina Goldman; Nicola F. Müller; Myrta Brunner; Daniel Wüthrich; Sarah Tschudin-Sutter; Emma Hodcroft; Richard Neher; Claudia Saalfrank; James Hadfield; Trevor Bedford; Mohammedyaseen Syedbasha; Thomas Vogel; Noémie Augustin; Jan Bauer; Nadine Sailer; Nadezhda Amar-Sliwa; Daniela Lang; Helena M.B. Seth-Smith; Annette Blaich; Yvonne Hollenstein; Olivier Dubuis; Michael Nägele; Andreas Buser; Christian H. Nickel; Nicole Ritz; Andreas Zeller; Tanja Stadler; Manuel Battegay; Rita Schneider-Sliwa
Title: High-resolution influenza mapping of a city reveals socioeconomic determinants of transmission within and between urban quarters
  • Document date: 2020_4_4
    • ID: n57hoty4_73
    Snippet: We next reconstructed the phylogenetic trees of all initial clusters by using the full genomes of all 751 samples from the initial clusters. We fixed the evolutionary rates to be equal to the mean 752 evolutionary rates as estimated using the methods above. As a population model, we used a 753 . CC-BY-NC 4.0 International license author/funder. It is made available under a The copyright holder for this preprint (which was not peer-reviewed) is th.....
    Document: We next reconstructed the phylogenetic trees of all initial clusters by using the full genomes of all 751 samples from the initial clusters. We fixed the evolutionary rates to be equal to the mean 752 evolutionary rates as estimated using the methods above. As a population model, we used a 753 . CC-BY-NC 4.0 International license author/funder. It is made available under a The copyright holder for this preprint (which was not peer-reviewed) is the . https://doi.org/10.1101/2020.04.03.023135 doi: bioRxiv preprint constant coalescent model with an estimated effective population size that was shared among all 754 initial clusters. We then estimated a distribution of phylogenies for each initial cluster, assuming 755 that all segments share the same phylogeny. As estimated in the previous analysis, reassortment 756 will not bias evolutionary rates.

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