Selected article for: "average depth and reference genome"
Author: Jun Wu; Dingyun Song; Zhongwen Li; Baojie Guo; Yani Xiao; Wenjing Liu; Lingmin Liang; Chunjing Feng; Tingting Gao; Zai Wang; Jianyan Wen; Shengnan Yang; Peipei Liu; Lei Wang; Yukai Wang; Liang Peng; Guihai Feng; Shiqiang Huang; Glyn Nigel Stacey; Wei Li; Yan Huo; Ronghua Jin; Qi Zhou; Liu Wang; Baoyang Hu; Huaping Dai; Jie Hao
Title: Immunity-and-Matrix-Regulatory Cells Derived from Human Embryonic Stem Cells Safely and Effectively Treat Mouse Lung Injury and Fibrosis
  • Document date: 2020_4_16
    • ID: 8dpla6jt_12
    Snippet: The copyright holder for this preprint (which was not peer-reviewed) is the . https://doi.org/10.1101/2020.04.15.042119 doi: bioRxiv preprint Ltd) and used to analyze single nucleotide mutation changes between IMRCs and hESCs. As previously 294 described 28 , the whole-genome sequencing data was mapped to the hg19 reference genome by BWA 295 (version 0.7.15) using the 'mem' mode with default parameters. The genome coverage were calculated 296 by .....
    Document: The copyright holder for this preprint (which was not peer-reviewed) is the . https://doi.org/10.1101/2020.04.15.042119 doi: bioRxiv preprint Ltd) and used to analyze single nucleotide mutation changes between IMRCs and hESCs. As previously 294 described 28 , the whole-genome sequencing data was mapped to the hg19 reference genome by BWA 295 (version 0.7.15) using the 'mem' mode with default parameters. The genome coverage were calculated 296 by bedtools 29 . The normalized coverage depth for each bin was calculated by dividing the raw coverage 297 depth by the average sequencing depth. Duplicate reads were removed and the uniquely mapped reads 298

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