Author: Asif Shajahan; Nitin T. Supekar; Anne S. Gleinich; Parastoo Azadi
Title: Deducing the N- and O-glycosylation profile of the spike protein of novel coronavirus SARS-CoV-2 Document date: 2020_4_3
ID: f0xsisdg_36
Snippet: The LC-MS/MS spectra of tryptic, chymotryptic and combined tryptic /chymotryptic digests of glycoproteins were searched against the .fasta sequence of spike protein S1 and S2 subunit using the Byonic software by choosing appropriate peptide cleavage sites (semi-specific cleavage option enabled). Oxidation of methionine, deamidation of asparagine and glutamine, possible common human N-glycans and O-glycan masses were used as variable modifications.....
Document: The LC-MS/MS spectra of tryptic, chymotryptic and combined tryptic /chymotryptic digests of glycoproteins were searched against the .fasta sequence of spike protein S1 and S2 subunit using the Byonic software by choosing appropriate peptide cleavage sites (semi-specific cleavage option enabled). Oxidation of methionine, deamidation of asparagine and glutamine, possible common human N-glycans and O-glycan masses were used as variable modifications. The LC-MS/MS spectra were also analyzed manually for the glycopeptides with the support of the Xcalibur software. The HCDpdCID MS 2 spectra of glycopeptides were evaluated for the glycan neutral loss author/funder. All rights reserved. No reuse allowed without permission.
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