Author: C I Mendes; E Lizarazo; M P Machado; D N Silva; A Tami; M Ramirez; N Couto; J W A Rossen; J A Carriço
Title: DEN-IM: Dengue Virus identification from shotgun and targeted metagenomics Document date: 2019_5_6
ID: 46w17i8r_18
Snippet: The DENV mapping database can be altered with the "-reference" parameter, or alternatively, a 349 Bowtie2 index can be provided with the "-index " parameter. This allows for the workflow to work 350 with other databases obtained through public and owned DENV genomes. The coverage estimation 351 step is performed on the retrieved DENV reads with the same parameters are the first estimation 352 ("-genomeSize=0.012" and "-minCoverage=10")......
Document: The DENV mapping database can be altered with the "-reference" parameter, or alternatively, a 349 Bowtie2 index can be provided with the "-index " parameter. This allows for the workflow to work 350 with other databases obtained through public and owned DENV genomes. The coverage estimation 351 step is performed on the retrieved DENV reads with the same parameters are the first estimation 352 ("-genomeSize=0.012" and "-minCoverage=10").
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