Author: C I Mendes; E Lizarazo; M P Machado; D N Silva; A Tami; M Ramirez; N Couto; J W A Rossen; J A Carriço
Title: DEN-IM: Dengue Virus identification from shotgun and targeted metagenomics Document date: 2019_5_6
ID: 46w17i8r_8
Snippet: Of the 106 samples, 43 (40.60%) managed to assemble a complete CDS sequence (Table S1) 205 whereas a mapping approach was used for the remaining 63 samples (59.90%) and a consensus CDS In all samples DENV 3-III was correctly identified, demonstrating the success of DEN-IM's two 239 pronged approach of combining assemblers and mapping. We suggest that the lower assembly success The copyright holder for this preprint (which was not peer-reviewed) i.....
Document: Of the 106 samples, 43 (40.60%) managed to assemble a complete CDS sequence (Table S1) 205 whereas a mapping approach was used for the remaining 63 samples (59.90%) and a consensus CDS In all samples DENV 3-III was correctly identified, demonstrating the success of DEN-IM's two 239 pronged approach of combining assemblers and mapping. We suggest that the lower assembly success The copyright holder for this preprint (which was not peer-reviewed) is the . https://doi.org/10.1101/628073 doi: bioRxiv preprint Figure 5 . Maximum likelihood circular tree in the DEN-IM report for the 106 complete CDSs obtained with the targeted metagenomics dataset (n=106). All samples belong to serotype 3 genotype III.
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