Author: Julien Riou; Chiara Poletto; Pierre-Yves Boëlle
Title: Improving early epidemiological assessment of emerging Aedes-transmitted epidemics using historical data Document date: 2018_4_16
ID: 7gh1yzaa_9
Snippet: where subscript X refers to disease (X = C for CHIKV or X = Z for ZIKV), R 0,X is the basic reproduction number, N the population size, and S t,X = N − t−1 k=0 O k,X /Ï X the number of individuals susceptible to infection at time t where Ï X is the reporting rate. The term 5 n=1 w t,X,n O t−n accounts for exposure to infection at time t, where w k is the discretized serial interval distribution. The variance is computed as the mean divide.....
Document: where subscript X refers to disease (X = C for CHIKV or X = Z for ZIKV), R 0,X is the basic reproduction number, N the population size, and S t,X = N − t−1 k=0 O k,X /Ï X the number of individuals susceptible to infection at time t where Ï X is the reporting rate. The term 5 n=1 w t,X,n O t−n accounts for exposure to infection at time t, where w k is the discretized serial interval distribution. The variance is computed as the mean divided by the overdispersion parameter φ X . The model was implemented in Stan version 2.15.1 R version 3.4.0 [33, 34, 35] . More details regarding the epidemic model and the Stan code are available in the supplementary appendix.
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