Selected article for: "dna virus and new host"
Author: Jakub M Bartoszewicz; Anja Seidel; Bernhard Y Renard
Title: Interpretable detection of novel human viruses from genome sequencing data
  • Document date: 2020_1_30
    • ID: ac00tai9_65
    Snippet: We presented a new approach for predicting a host of a novel virus based on a single DNA read or a read pair, cutting the error rates in half compared to the previous state-of-the-art. For convolutional filters, we jointly visualize nucleotide contributions and information content. Finally, we use GWPA plots to gain insights into the models' behavior and analyze a recently emerged SARS-CoV-2 virus. Data is available at https://doi.org/10.5281/zen.....
    Document: We presented a new approach for predicting a host of a novel virus based on a single DNA read or a read pair, cutting the error rates in half compared to the previous state-of-the-art. For convolutional filters, we jointly visualize nucleotide contributions and information content. Finally, we use GWPA plots to gain insights into the models' behavior and analyze a recently emerged SARS-CoV-2 virus. Data is available at https://doi.org/10.5281/zenodo.3630803 and the code is submitted in Supplementary Material. The copyright holder for this preprint (which was not peer-reviewed) is the . https://doi.org/10.1101/2020.01.29.925354 doi: bioRxiv preprint

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