Author: Jonathan L Schmid-Burgk; David Li; David Feldman; Mikolaj Slabicki; Jacob Borrajo; Jonathan Strecker; Brian Cleary; Aviv Regev; Feng Zhang
Title: LAMP-Seq: Population-Scale COVID-19 Diagnostics Using a Compressed Barcode Space Document date: 2020_4_8
ID: 68ps3uit_7
Snippet: We propose the following approach for population-scale testing for SARS-CoV-2 infection: a barcoded RT-LAMP reaction is performed on an unpurified swab sample with primers specific for the SARS-CoV-2 genome, which is followed by large-scale pooling of samples, PCR amplification with additional barcoding, deep sequencing, and data analysis to identify positive individuals ( Fig. 1A ) (see below for detailed suggested protocol). Advantages of perfo.....
Document: We propose the following approach for population-scale testing for SARS-CoV-2 infection: a barcoded RT-LAMP reaction is performed on an unpurified swab sample with primers specific for the SARS-CoV-2 genome, which is followed by large-scale pooling of samples, PCR amplification with additional barcoding, deep sequencing, and data analysis to identify positive individuals ( Fig. 1A ) (see below for detailed suggested protocol). Advantages of performing the RT-LAMP reaction at the site of sample collection include eliminating RNA extraction and . CC-BY-NC-ND 4.0 International license author/funder. It is made available under a The copyright holder for this preprint (which was not peer-reviewed) is the . https://doi.org/10.1101/2020.04.06.025635 doi: bioRxiv preprint 5 concerns about RNA stability, providing sterilization before shipment, and allowing parallel logistics of large numbers of samples through remote sample pooling.
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