Author: Nelly Mostajo Berrospi; Marie Lataretu; Sebastian Krautwurst; Florian Mock; Daniel Desirò; Kevin Lamkiewicz; Maximilian Collatz; Andreas Schoen; Friedemann Weber; Manja Marz; Martin Hölzer
Title: A comprehensive annotation and differential expression analysis of short and long non-coding RNAs in 16 bat genomes Document date: 2019_8_19
ID: ihqvcxv6_67
Snippet: From 107,039 LNCipedia transcripts we annotated 24,316 genes and 182,451 lncRNA hot spots. We defined regions in a genome as a lncRNA hot spot, if different LNCipedia transcripts derived from different genes map to the same region (see Methods for detailed description). Overall, we found between 58,425 and 137,161 potential lncRNA genes in M. lucifugus and R. sinicus, respectively, and between 27,149 and 158,135 lncRNA hot spots in M. lucifugus a.....
Document: From 107,039 LNCipedia transcripts we annotated 24,316 genes and 182,451 lncRNA hot spots. We defined regions in a genome as a lncRNA hot spot, if different LNCipedia transcripts derived from different genes map to the same region (see Methods for detailed description). Overall, we found between 58,425 and 137,161 potential lncRNA genes in M. lucifugus and R. sinicus, respectively, and between 27,149 and 158,135 lncRNA hot spots in M. lucifugus and D. rotundus, respectively. We annotated the previously described lncRNAs Tbx5-as1 and Hottip 33 in all bat genomes, except Tbx5-as1 in M. lucifugus, presumably due to the lower genome assembly quality (Tab. 1).
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