Author: Yuri I. Wolf; Darius Kazlauskas; Jaime Iranzo; Adriana LucÍa-Sanz; Jens H. Kuhn; Mart Krupovic; Valerian V. Dolja; Eugene V. Koonin
Title: Origins and Evolution of the Global RNA Virome Document date: 2018_10_24
ID: 8z78shbf_8
Snippet: Here we reexamine the evolutionary relationships among and within the 3 Baltimore Classes 155 of RNA viruses through a comprehensive analysis of the available genomic and metagenomic 156 sequences. In particular, to build a phylogenetic tree of thousands of viral RdRps, we designed RdRp sequences (Data set S1) and 1,028 RT sequences organized in 50+2 clusters (50 clusters 180 of RdRps and 2 clusters of RTs; see Materials and Methods for details)......
Document: Here we reexamine the evolutionary relationships among and within the 3 Baltimore Classes 155 of RNA viruses through a comprehensive analysis of the available genomic and metagenomic 156 sequences. In particular, to build a phylogenetic tree of thousands of viral RdRps, we designed RdRp sequences (Data set S1) and 1,028 RT sequences organized in 50+2 clusters (50 clusters 180 of RdRps and 2 clusters of RTs; see Materials and Methods for details). This sequence set did 181 not include RdRps of members of the families Birnaviridae or Permutatetraviridae, distinct 182 groups of RNA viruses that encompass a circular permutation within the RdRp Palm domain 183 (46) and therefore could not be confidently included in the alignment over their entire lengths. 184 All rights reserved. No reuse allowed without permission.
Search related documents:
Co phrase search for related documents- comprehensive analysis and Methods Materials: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18
- comprehensive analysis and phylogenetic tree: 1, 2, 3, 4, 5, 6
- comprehensive analysis and RNA virus: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10
- comprehensive analysis and set sequence: 1
- detail Methods Materials and Methods Materials: 1, 2, 3
- entire length and RdRp sequence: 1
- evolutionary relationship and Methods Materials: 1
- evolutionary relationship and phylogenetic tree: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16
- evolutionary relationship and RdRp sequence: 1
- evolutionary relationship and RNA virus: 1, 2
- evolutionary relationship and set sequence: 1
- Methods Materials and phylogenetic tree: 1, 2, 3, 4, 5, 6
- Methods Materials and RNA virus: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21
- Methods Materials and RT sequence: 1, 2, 3
- Methods Materials and set sequence: 1
- Palm domain and RNA virus: 1, 2, 3, 4, 5
- phylogenetic tree and RNA virus: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21
- phylogenetic tree and RT sequence: 1, 2, 3, 4
- phylogenetic tree and set sequence: 1, 2, 3, 4, 5, 6
Co phrase search for related documents, hyperlinks ordered by date