Author: Yongjun Tan; Theresa Schneider; Matthew Leong; L Aravind; Dapeng Zhang
Title: Novel Immunoglobulin Domain Proteins Provide Insights into Evolution and Pathogenesis Mechanisms of SARS-Related Coronaviruses Document date: 2020_3_7
ID: h5ire02h_5
Snippet: The consensus of the alignment was calculated using a custom Perl script. The alignments were colored 78 using an in-house alignment visualization program written in perl and further modified using adobe 79 illustrator. Signal peptides were predicted by the SignalP-5.0 Server (19 P is the fraction of residues of amino acid type i, and M is the number of amino acid types. The Shannon 104 entropy for the ith position in the alignment ranges from 0 .....
Document: The consensus of the alignment was calculated using a custom Perl script. The alignments were colored 78 using an in-house alignment visualization program written in perl and further modified using adobe 79 illustrator. Signal peptides were predicted by the SignalP-5.0 Server (19 P is the fraction of residues of amino acid type i, and M is the number of amino acid types. The Shannon 104 entropy for the ith position in the alignment ranges from 0 (only one residue at that position) to 4.32 (all 105 20 residues equally represented at that position). Analysis of the entropy values which were thus 106 derived was performed using the R language. 107 108
Search related documents:
Co phrase search for related documents- alignment consensus and entropy value: 1
- amino acid and entropy value: 1
- amino acid and position represent: 1, 2
- amino acid and position residue: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48
- amino acid and Server predict: 1, 2
- amino acid and signal peptide: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47, 48, 49, 50, 51, 52, 53, 54
- custom Perl script and Perl script: 1
Co phrase search for related documents, hyperlinks ordered by date