Author: David A Wilkinson; Lea Joffrin; Camille Lebarbenchon; Patrick Mavingui
Title: Partial RdRp sequences offer a robust method for Coronavirus subgenus classification Document date: 2020_3_6
ID: jjraqr85_14
Snippet: MyCoV was written as a basic wrapper script for blastn, which queries sequences of interest against 152 the established database, and summarises subgenus classification, subgenus posterior support of 153 the most similar sequence in the phylogenetic analysis, pairwise distances to the most similar 154 sequence in the database and their metadata using R packages "ggplot2", "formattable" (available at 155 https://github.com/renkun-ken/formattable) .....
Document: MyCoV was written as a basic wrapper script for blastn, which queries sequences of interest against 152 the established database, and summarises subgenus classification, subgenus posterior support of 153 the most similar sequence in the phylogenetic analysis, pairwise distances to the most similar 154 sequence in the database and their metadata using R packages "ggplot2", "formattable" (available at 155 https://github.com/renkun-ken/formattable) and "ggtree" (26). 156 author/funder. All rights reserved. No reuse allowed without permission.
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