Author: Nelly Mostajo Berrospi; Marie Lataretu; Sebastian Krautwurst; Florian Mock; Daniel Desirò; Kevin Lamkiewicz; Maximilian Collatz; Andreas Schoen; Friedemann Weber; Manja Marz; Martin Hölzer
Title: A comprehensive annotation and differential expression analysis of short and long non-coding RNAs in 16 bat genomes Document date: 2019_8_19
ID: ihqvcxv6_53
Snippet: After reading in all features and asserting correct file structure, overlaps were resolved in the following manner: (1) exons are considered overlapping if more than 50 % of the shorter one is covered by the larger one. (2) if only one of the overlapping set is of biotype protein-coding, remove all others. (3) for further ties, keep only the exon that is highest on a priority list based on annotation source. (4) for further ties, keep only the lo.....
Document: After reading in all features and asserting correct file structure, overlaps were resolved in the following manner: (1) exons are considered overlapping if more than 50 % of the shorter one is covered by the larger one. (2) if only one of the overlapping set is of biotype protein-coding, remove all others. (3) for further ties, keep only the exon that is highest on a priority list based on annotation source. (4) for further ties, keep only the longest of the exons. For each exon to be removed the corresponding transcript is deleted, and gene records that lost all transcripts are also deleted.
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