Author: Chengxin Zhang; Wei Zheng; Xiaoqiang Huang; Eric W. Bell; Xiaogen Zhou; Yang Zhang
Title: Protein structure and sequence re-analysis of 2019-nCoV genome does not indicate snakes as its intermediate host or the unique similarity between its spike protein insertions and HIV-1 Document date: 2020_2_8
ID: mtv80pjo_14
Snippet: As per the previous study 4 , the RSCU for codon j in a species is calculated as where k j is the number of codons synonymous to codon j (including j itself), p j is the probability of the respective amino acid being encoded by codon j among all k j synonymous codons in the CDSs of the whole genome. The difference of codon usage in two different species (a virus versus a vertebrate in our case) is defined by squared Euclidean distance of RSCU, i......
Document: As per the previous study 4 , the RSCU for codon j in a species is calculated as where k j is the number of codons synonymous to codon j (including j itself), p j is the probability of the respective amino acid being encoded by codon j among all k j synonymous codons in the CDSs of the whole genome. The difference of codon usage in two different species (a virus versus a vertebrate in our case) is defined by squared Euclidean distance of RSCU, i.e.,
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