Author: Marie Hoffmann; Michael T. Monaghan; Knut Reinert
Title: PriSeT: Efficient De Novo Primer Discovery Document date: 2020_4_7
ID: 3b3hv53b_32
Snippet: For indexing and k-mer report we use the recently published GenMap v1.0.1 by Pockrandt et al. (2019) . As library input GenMap accepts a FASTA file or directory of FASTA files. Once computed, the FM index is used to answer frequency queries for arbitrary values of k. We modified GenMap to accept a frequency threshold parameter to avoid temporary storage of low frequent k-mers (see GenMap fork 8 ). Algorithm 1 describes the call given GenMap's int.....
Document: For indexing and k-mer report we use the recently published GenMap v1.0.1 by Pockrandt et al. (2019) . As library input GenMap accepts a FASTA file or directory of FASTA files. Once computed, the FM index is used to answer frequency queries for arbitrary values of k. We modified GenMap to accept a frequency threshold parameter to avoid temporary storage of low frequent k-mers (see GenMap fork 8 ). Algorithm 1 describes the call given GenMap's interface.
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