Author: Marie Hoffmann; Michael T. Monaghan; Knut Reinert
Title: PriSeT: Efficient De Novo Primer Discovery Document date: 2020_4_7
ID: 3b3hv53b_7
Snippet: A reference sequence of length N contains O(KN 2 ) many k-mer pairs which need to undergo filtering of C s and C p where K is the k-mer length range. We use the k-mer frequency computation on the FM index of the library to quickly identify frequent k-mers -above a thresholdwhich then undergo two processing steps: filtering and combination into pairs......
Document: A reference sequence of length N contains O(KN 2 ) many k-mer pairs which need to undergo filtering of C s and C p where K is the k-mer length range. We use the k-mer frequency computation on the FM index of the library to quickly identify frequent k-mers -above a thresholdwhich then undergo two processing steps: filtering and combination into pairs.
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