Selected article for: "secondary structure and structure prediction"
Author: Neha Jain; Uma Shankar; Prativa Majee; Amit Kumar
Title: Scrutinizing the SARS-CoV-2 protein information for the designing an effective vaccine encompassing both the T-cell and B-cell epitopes
  • Document date: 2020_4_1
    • ID: lmstdmyb_33
    Snippet: Secondary structure of the multi-epitope vaccine construct was predicted using SOPMA(https://npsaprabi.ibcp.fr/cgibin/npsa_automat.pl?page=/NPSA/npsa_sopma.html) [50] and PSI-PRED (http://bioinf.cs.ucl.ac.uk/psipred/) server [51] . For the tertiary structure prediction of the vaccine construct Robetta server (http://robetta.bakerlab.org/) based on ab initio and homology modelling was utilized [52] . The predicted structure was refined by using 3D.....
    Document: Secondary structure of the multi-epitope vaccine construct was predicted using SOPMA(https://npsaprabi.ibcp.fr/cgibin/npsa_automat.pl?page=/NPSA/npsa_sopma.html) [50] and PSI-PRED (http://bioinf.cs.ucl.ac.uk/psipred/) server [51] . For the tertiary structure prediction of the vaccine construct Robetta server (http://robetta.bakerlab.org/) based on ab initio and homology modelling was utilized [52] . The predicted structure was refined by using 3D Refine (http://sysbio.rnet.missouri.edu/3Drefine/) [53] and further . CC-BY-ND 4.0 International license author/funder. It is made available under a The copyright holder for this preprint (which was not peer-reviewed) is the . https://doi.org/10.1101/2020.03.26.009209 doi: bioRxiv preprint by GalaxyRefine (http://galaxy.seoklab.org/cgi-bin/submit.cgi?type=REFINE) [54] .

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