Author: Andrea Torneri; Amin Azmon; Christel Faes; Eben Kenah; Gianpaolo Scalia Tomba; Jacco Wallinga; Niel Hens
Title: Realized generation times: contraction and impact of infectious period, reproduction number and population size Document date: 2019_3_8
ID: ag9mzwkx_34
Snippet: Every time an infectious contact is proposed we keep track of the current time t j and the probability of encountering a susceptible individual at that specific time ξ tj , computed as the proportion of susceptibles over the population size. We than fit a 5-parameters logistic curve f (x|{t j } j , {ξ tj } j ) to the simulated values using the function drm of the drc package in R. At this point we approximate the derivative of the fitted functi.....
Document: Every time an infectious contact is proposed we keep track of the current time t j and the probability of encountering a susceptible individual at that specific time ξ tj , computed as the proportion of susceptibles over the population size. We than fit a 5-parameters logistic curve f (x|{t j } j , {ξ tj } j ) to the simulated values using the function drm of the drc package in R. At this point we approximate the derivative of the fitted function as:
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