Selected article for: "codon usage and International license"
Author: Jacob Kames; David Dillon Holcomb; Ofer Kimchi; Michael DiCuccio; Nobuko Hamasaki-Katagiri; Tony Wang; Anton A Komar; Aikaterini Alexaki; Chava Kimchi-Sarfaty
Title: Sequence analysis of SARS-CoV-2 genome reveals features important for vaccine design
  • Document date: 2020_3_31
    • ID: 2fn25l6m_31
    Snippet: Sequences of poor quality or with CDS lengths that did not match those of the reference sequence due to deletion or insertion were removed, leaving 87 sequences. To calculate percent difference in codon usage, each CDS of the 87 sequences was compared at the codon level to that of the reference . CC-BY 4.0 International license author/funder. It is made available under a The copyright holder for this preprint (which was not peer-reviewed) is the .....
    Document: Sequences of poor quality or with CDS lengths that did not match those of the reference sequence due to deletion or insertion were removed, leaving 87 sequences. To calculate percent difference in codon usage, each CDS of the 87 sequences was compared at the codon level to that of the reference . CC-BY 4.0 International license author/funder. It is made available under a The copyright holder for this preprint (which was not peer-reviewed) is the . https://doi.org/10.1101/2020.03.30.016832 doi: bioRxiv preprint sequence. Codons containing nucleotides where a base call could not be made ("N") were removed from the calculation. All scripts for this calculation were written in Python 3.7.4.

    Search related documents:
    Co phrase search for related documents
    • codon usage percent difference and reference sequence: 1
    • insertion deletion and reference sequence: 1, 2, 3
    • percent difference and reference sequence: 1
    • poor quality and reference sequence: 1, 2
    • poor quality and reference sequence match: 1