Selected article for: "amino acid and structure model"
Author: Sukrit Srivastava; Sonia Verma; Mohit Kamthania; Rupinder Kaur; Ruchi Kiran Badyal; Ajay Kumar Saxena; Ho-Joon Shin; Kailash Pandey; Michael Kolbe
Title: Structural basis to design multi-epitope vaccines against Novel Coronavirus 19 (COVID19) infection, the ongoing pandemic emergency: an in silico approach
  • Document date: 2020_4_3
    • ID: 80m78jh2_13
    Snippet: The copyright holder for this preprint (which was not peer-reviewed) is the . https://doi.org/10.1101/2020.04.01.019299 doi: bioRxiv preprint 22 sequence-to-structure-to-function paradigm (Roy et al., 2010) . The tool 495 generates three-dimensional (3D) atomic models from multiple threading 496 alignments and iterative structural assembly simulations for a submitted amino 497 acid sequence. I-TASSER works based on the structure templates identif.....
    Document: The copyright holder for this preprint (which was not peer-reviewed) is the . https://doi.org/10.1101/2020.04.01.019299 doi: bioRxiv preprint 22 sequence-to-structure-to-function paradigm (Roy et al., 2010) . The tool 495 generates three-dimensional (3D) atomic models from multiple threading 496 alignments and iterative structural assembly simulations for a submitted amino 497 acid sequence. I-TASSER works based on the structure templates identified by 498 LOMETS, a meta-server, from the PDB library. I-TASSER only uses the 499 templates of the highest Z-score which is the difference between the raw and 500 of templet proteins is based on TM-score of the structural alignment between the 508 query structure model and known structures. The RMSD is the RMSD between 509 templet residues and query residues that are structurally aligned by TM-align. 510

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