Author: Naoto Hori; Natalia A. Denesyuk; D. Thirumalai
Title: Salt Effects on the Thermodynamics of a Frameshifting RNA Pseudoknot under Tension Document date: 2016_4_15
ID: 08mep8hm_12
Snippet: The dependence of the stability of the F state with respect to the U state, ∆G UF (T ) is calculated using a procedure that does not rely on any order parameter The copyright holder for this preprint (which was not peer-reviewed) is the author/funder. It . https://doi.org/10.1101/048801 doi: bioRxiv preprint [37] . The value of ∆G UF (T = 37 • C) is -14.3 kcal/mol from simulations, which is in excellent agreement with experiments. The exper.....
Document: The dependence of the stability of the F state with respect to the U state, ∆G UF (T ) is calculated using a procedure that does not rely on any order parameter The copyright holder for this preprint (which was not peer-reviewed) is the author/funder. It . https://doi.org/10.1101/048801 doi: bioRxiv preprint [37] . The value of ∆G UF (T = 37 • C) is -14.3 kcal/mol from simulations, which is in excellent agreement with experiments. The experimental value reported by Nixon and Giedroc for ∆G UF (T = 37 • C) = −13.3 kcal/mol, whereas Soto et al. estimated that ∆G UF (T = 37 • C) = −15.1 kcal/mol [30, 31] . We also predict that ∆G UF (T = 25 • C) is −19.0 kcal/mol. The excellent agreement between simulations and experiments for the temperatureinduced structural transitions and the ∆G UF (T ) validates the model allowing us to predict the effect of f on BWYV PK.
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