Author: Nelly Mostajo Berrospi; Marie Lataretu; Sebastian Krautwurst; Florian Mock; Daniel Desirò; Kevin Lamkiewicz; Maximilian Collatz; Andreas Schoen; Friedemann Weber; Manja Marz; Martin Hölzer
Title: A comprehensive annotation and differential expression analysis of short and long non-coding RNAs in 16 bat genomes Document date: 2019_8_19
ID: ihqvcxv6_27
Snippet: All of our annotations follow the General Transfer Format (GTF) as described and defined in the Ensembl 45 data base (https://ensembl.org/info/website/upload/gff.html). Therefore, each row of each annotation file is either defined as a gene, transcript, or exon (by the feature column) and strictly following a hierarchical structure, even if only one exon (as for most ncRNAs) is reported. By adhering to this annotation format, our novel annotation.....
Document: All of our annotations follow the General Transfer Format (GTF) as described and defined in the Ensembl 45 data base (https://ensembl.org/info/website/upload/gff.html). Therefore, each row of each annotation file is either defined as a gene, transcript, or exon (by the feature column) and strictly following a hierarchical structure, even if only one exon (as for most ncRNAs) is reported. By adhering to this annotation format, our novel annotations can be easily merged with existing ones as derived from Ensembl or NCBI and are directly usable as input for computational tools such as HISAT2 for mapping or featureCounts for transcript abundance estimation. We defined gene, transcript, and exon IDs following the Ensembl pattern:
Search related documents:
Co phrase search for related documents- annotation file and exon transcript gene: 1
- annotation format and exon transcript: 1
Co phrase search for related documents, hyperlinks ordered by date