Author: Cleemput, Sara; Dumon, Wim; Fonseca, Vagner; Karim, Wasim Abdool; Giovanetti, Marta; Alcantara, Luiz Carlos; Deforche, Koen; de Oliveira, Tulio
Title: Genome Detective Coronavirus Typing Tool for rapid identification and characterization of novel coronavirus genomes Cord-id: gxstlzuk Document date: 2020_2_2
ID: gxstlzuk
Snippet: Genome Detective is a web-based, user-friendly software application to quickly and accurately assemble all known virus genomes from next generation sequencing datasets. This application allows the identification of phylogenetic clusters and genotypes from assembled genomes in FASTA format. Since its release in 2019, we have produced a number of typing tools for emergent viruses that have caused large outbreaks, such as Zika and Yellow Fever Virus in Brazil. Here, we present The Genome Detective
Document: Genome Detective is a web-based, user-friendly software application to quickly and accurately assemble all known virus genomes from next generation sequencing datasets. This application allows the identification of phylogenetic clusters and genotypes from assembled genomes in FASTA format. Since its release in 2019, we have produced a number of typing tools for emergent viruses that have caused large outbreaks, such as Zika and Yellow Fever Virus in Brazil. Here, we present The Genome Detective Coronavirus Typing Tool that can accurately identify novel coronavirus (2019-nCoV) sequences isolated in China and around the world. The tool can accept up to 2,000 sequences per submission and the analysis of a new whole genome sequence will take approximately one minute. The tool has been tested and validated with hundreds of whole genomes from ten coronavirus species, and correctly classified all of the SARS-related coronavirus (SARSr-CoV) and all of the available public data for 2019-nCoV. The tool also allows tracking of new viral mutations as the outbreak expands globally, which may help to accelerate the development of novel diagnostics, drugs and vaccines.
Search related documents:
Co phrase search for related documents- accession number and acute respiratory syndrome: 1, 2, 3
- accuracy sensitivity and acid sequence: 1, 2
- accuracy sensitivity and acute respiratory syndrome: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25
- accuracy sensitivity and mafft software: 1, 2
- accuracy sensitivity high specificity and acid sequence: 1
- accuracy sensitivity high specificity and acute respiratory syndrome: 1, 2, 3, 4, 5, 6, 7, 8, 9
- accuracy sensitivity specificity and acid sequence: 1, 2
- accuracy sensitivity specificity and acute respiratory syndrome: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25
- accuracy sensitivity specificity and mafft software: 1, 2
- accuracy specificity and acid sequence: 1, 2, 3, 4
- accuracy specificity and acute respiratory syndrome: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25
- accuracy specificity and mafft software: 1, 2
- accurate aligner and mafft software: 1, 2
- accurate identification and acid sequence: 1
- accurate identification and acute respiratory syndrome: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25
- accurate identification and additional parameter: 1
- acid sequence and acute respiratory syndrome: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25
- acid sequence and mafft software: 1
- acute respiratory syndrome and additional parameter: 1
Co phrase search for related documents, hyperlinks ordered by date