Selected article for: "AlgPred prediction and allergenicity prediction"
Author: Bishajit Sarkar; Md. Asad Ullah; Fatema Tuz Johora; Masuma Afrin Taniya; Yusha Araf
Title: The Essential Facts of Wuhan Novel Coronavirus Outbreak in China and Epitope-based Vaccine Designing against COVID-19
  • Document date: 2020_2_11
    • ID: 7vrm081c_27
    Snippet: The antigenicity of the constructed vaccines was predicted by the online server VaxiJen v2.0 (http://www.ddg-pharmfac.net/vaxijen/VaxiJen/VaxiJen.htm) using the tumor model where the threshold was set at 0.4. The allergenicity of the predicted vaccines were determined by two online tools for improving the prediction accuracy i.e., AlgPred (http://crdd.osdd.net/raghava/algpred/) and AllerTop v2.0 (https://www.ddg-pharmfac.net/AllerTOP/). MEME/MAST.....
    Document: The antigenicity of the constructed vaccines was predicted by the online server VaxiJen v2.0 (http://www.ddg-pharmfac.net/vaxijen/VaxiJen/VaxiJen.htm) using the tumor model where the threshold was set at 0.4. The allergenicity of the predicted vaccines were determined by two online tools for improving the prediction accuracy i.e., AlgPred (http://crdd.osdd.net/raghava/algpred/) and AllerTop v2.0 (https://www.ddg-pharmfac.net/AllerTOP/). MEME/MAST motif prediction was used to predict the allergenicity of the vaccines by AlgPred [136] . Later, ProtParam (https://web.expasy.org/protparam/) was used to predict different physicochemical properties of the predicted vaccines [109] .

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