Selected article for: "protein sequence alignment and sequence alignment"
Author: Spyridon Megremis; Thomas Walker; Xiaotong He; James O'Sullivan; William E.R. Ollier; Hector Chinoy; Neil Pendleton; Antony Payton; Lynne Hampson; Ian Hampson; Janine Lamb
Title: Microbial and autoantibody immunogenic repertoires in TIF1? autoantibody positive dermatomyositis
  • Document date: 2020_3_26
    • ID: hroxg2u1_46
    Snippet: identical AAs between TRIM3 and variola virus. Red font; different AAs between TRIM3 and variola virus. Both epitopes are located only 6 AAs apart (relative to TRIM3 protein sequence). TRIM3 presents high similarity with TRIM33 in respect to the specific AA epitopes. (B) Partial alignment of the region where the TRIM47-HIV-syn9 high similarity epitope was identified. The TRIM47 protein sequence is presented next to the alignment plot. Yellow: the.....
    Document: identical AAs between TRIM3 and variola virus. Red font; different AAs between TRIM3 and variola virus. Both epitopes are located only 6 AAs apart (relative to TRIM3 protein sequence). TRIM3 presents high similarity with TRIM33 in respect to the specific AA epitopes. (B) Partial alignment of the region where the TRIM47-HIV-syn9 high similarity epitope was identified. The TRIM47 protein sequence is presented next to the alignment plot. Yellow: the TRIM47 epitopes with high AA similarity to HIV and syn9 phage ( Figure S7D ). Black font: identical AAs amongst TRIM47 and the . CC-BY-ND 4.0 International license author/funder. It is made available under a The copyright holder for this preprint (which was not peer-reviewed) is the . https://doi.org/10.1101/2020.03.25.007534 doi: bioRxiv preprint two viruses. Red font; different AAs amongst TRIM47 and the two viruses. The epitope is poorly conserved amongst the DM-specific TRIM proteins.

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