Selected article for: "amino acid substitution model and information criterion"
Author: Yonghua Wu
Title: Strong evolutionary convergence of receptor-binding protein spike between COVID-19 and SARS-related coronaviruses
  • Document date: 2020_3_4
    • ID: 4ihv80au_20
    Snippet: We reconstructed an maximum likelihood (ML) tree and neighbor-joining (NJ) tree using MEGA X 40 . For ML analyses, the WAG+ G model was selected as the best amino acid substitution model according to the Bayesian information criterion. All amino acid sites with an alignment gap were included for analyses. For NJ analyses, JTT+G was selected as the best model. For the ML and NJ analyses, the bootstrap value was set to 1, 000. Other parameters were.....
    Document: We reconstructed an maximum likelihood (ML) tree and neighbor-joining (NJ) tree using MEGA X 40 . For ML analyses, the WAG+ G model was selected as the best amino acid substitution model according to the Bayesian information criterion. All amino acid sites with an alignment gap were included for analyses. For NJ analyses, JTT+G was selected as the best model. For the ML and NJ analyses, the bootstrap value was set to 1, 000. Other parameters were used as defaults in the program.

    Search related documents:
    Co phrase search for related documents
    • alignment gap and amino acid site: 1
    • amino acid and analysis include: 1
    • amino acid and bayesian information criterion: 1, 2, 3
    • amino acid and bootstrap value: 1, 2
    • amino acid and good model: 1, 2, 3, 4, 5, 6, 7
    • amino acid and information criterion: 1, 2, 3
    • amino acid and likelihood ML tree: 1, 2
    • amino acid and maximum likelihood ML tree: 1, 2
    • amino acid and ML analysis: 1, 2, 3, 4
    • amino acid and ML tree: 1, 2, 3, 4, 5
    • amino acid and neighbor join: 1
    • amino acid site and ML analysis: 1
    • amino acid site and ML tree: 1
    • amino acid substitution model and bayesian information criterion: 1, 2
    • amino acid substitution model and information criterion: 1, 2
    • amino acid substitution model and ML analysis: 1
    • bayesian information criterion and bootstrap value: 1
    • bayesian information criterion and good model: 1
    • bayesian information criterion and information criterion: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21, 22, 23, 24, 25