Author: Nelly Mostajo Berrospi; Marie Lataretu; Sebastian Krautwurst; Florian Mock; Daniel Desirò; Kevin Lamkiewicz; Maximilian Collatz; Andreas Schoen; Friedemann Weber; Manja Marz; Martin Hölzer
Title: A comprehensive annotation and differential expression analysis of short and long non-coding RNAs in 16 bat genomes Document date: 2019_8_19
ID: ihqvcxv6_77
Snippet: The copyright holder for this preprint (which was not peer-reviewed) is the . https://doi.org/10.1101/738526 doi: bioRxiv preprint The copyright holder for this preprint (which was not peer-reviewed) is the . https://doi.org/10.1101/738526 doi: bioRxiv preprint 2019 (Tab. 2) as a basis to identify DE ncRNAs that were newly discovered in this study and were not part of the current NCBI or Ensembl genome annotations for this bat species. More detai.....
Document: The copyright holder for this preprint (which was not peer-reviewed) is the . https://doi.org/10.1101/738526 doi: bioRxiv preprint The copyright holder for this preprint (which was not peer-reviewed) is the . https://doi.org/10.1101/738526 doi: bioRxiv preprint 2019 (Tab. 2) as a basis to identify DE ncRNAs that were newly discovered in this study and were not part of the current NCBI or Ensembl genome annotations for this bat species. More detailed DE results can be found in Files S2. We filtered for novel M. lucifugus DE ncRNAs by a) an absolute log 2 fold change (fc) > 1, b) an adjusted p-value < 0.05, and c) a TPM > 10. We further manually investigated the expression patterns with the IGV 71 and discarded DE ncRNAs overlapping with the current NCBI (Myoluc2.0 annotation release 102) or Ensembl (Myoluc2.0.96) annotations.
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