Evaluation of a specialized filter-paper matrix for transportation of extended bovine semen to screen for bovine herpesvirus-1 by real-time PCR

Sarangi, Laxmi Narayan; Naveena, Thodangala; Rana, Samir Kumar; Surendra, Kota Sri Naga Leela; Reddy, Rachamreddy Venkata Chandrasekhar; Bajibabu, Putla; Ponnanna, Nadikerianda Muthappa; Sharma, Girish Kumar; Srinivasan, Villuppanoor Alwar

The extended frozen semen (EFS) batches produced from infectious bovine rhinotracheitis (IBR) sero-positive cattle and buffalo bulls housed in various semen stations in India are transported to the testing laboratory in liquid nitrogen (LN(2)) for screening bovine herpesvirus-1 (BoHV-1). This procedure is laborious and poses LN(2) related hazards. An alternative logistics for transportation of samples was investigated. Use of Flinders Technology Associates (FTA(®)) elute card was evaluated for transportation of extended bovine semen to screen BoHV-1 DNA by real-time PCR targeting gB gene and the method was compared with the OIE approved Chelex resin based method. A protocol for extraction of BoHV-1 DNA from FTA(®) card spotted with extended semen was optimized. The viral DNA was found to be stable on FTA(®) card for at least 28 days when the cards are stored at 4°–37 °C. The analytical sensitivity for the assay was determined using variable dilutions of BoHV-1 spiked semen and positive plasmid harbouring gB gene (97bp) spotted onto FTA(®) card and it was found to be 10(0.8) TCID(50)/ml or 100 copies respectively in real-time PCR. The test could detect as low as 10(0.008) TCID(50)/ml or 1 copy of positive plasmid when more number of replicates (n = 6) of the same sample were tested. This sensitivity was found to be comparable to Chelex method and both the methods demonstrated a very strong correlation (r = 0.9774; 95% CI: 0.9620–0.9860) in terms of Ct value (p < 0.0001). The diagnostic sensitivity and specificity of the FTA method in comparison to the Chelex method was 83.08% (95% CI: 71.73%–91.24%) and 93.23% (95% CI: 89.38%–96.01%) respectively when 316 samples were screened by both the methods. The degree of agreement between these two tests was good (Kappa value: 0.738; 95% CI: 0.646–0.829). The method was found to be robust and highly repeatable in inter-assay and intra-assay precision testing. The result suggests that the FTA(®) card holds promise as an alternative system for transportation of EFS for downstream screening of BoHV-1 DNA.