Selected article for: "genome analysis and reference genome"
Author: Hazel Stewart; Katherine Brown; Adam M. Dinan; Nerea Irigoyen; Eric J. Snijder; Andrew E. Firth
Title: The transcriptional and translational landscape of equine torovirus
  • Document date: 2018_4_7
    • ID: mozfm5ds_85
    Snippet: The sequencing data reported in this paper have been deposited in ArrayExpress 728 The copyright holder for this preprint (which was not peer-reviewed) is the . https://doi.org/10.1101/296996 doi: bioRxiv preprint The copyright holder for this preprint (which was not peer-reviewed) is the . https://doi.org/10.1101/296996 doi: bioRxiv preprint Figure 9 . Coding potential statistics for the torovirus genome. A map of the torovirus 818 genome is sho.....
    Document: The sequencing data reported in this paper have been deposited in ArrayExpress 728 The copyright holder for this preprint (which was not peer-reviewed) is the . https://doi.org/10.1101/296996 doi: bioRxiv preprint The copyright holder for this preprint (which was not peer-reviewed) is the . https://doi.org/10.1101/296996 doi: bioRxiv preprint Figure 9 . Coding potential statistics for the torovirus genome. A map of the torovirus 818 genome is shown at top. Breda virus (AY427798.1) was used as the reference 819 genome for this analysis since EToV has a deletion in the HE gene. In Breda virus, U1 820 is in-frame with ORF1a due to a 2-nt insertion relative to EToV in the short non- EToV MLFYIFKFCGFTLFTYGWQFVWLFAQFFVIPIFTVFLLFTVKAIFYLLRLVELSFSTLIIWLIEVLRKRK KM403390 MIFFILKFCVYTLFSYGWQFVWLFAQFLLIPIFTVLLVFTAKAVFYLLKLLEAAFTTLVLILIDKLKGAR LC088094 MILFILKFCVYTLFSYGWQFVWLFAQFLLIPIFTVLLVFTAKAVFYLLKLLEAAFTILVLVLIEKLKGVR LC088095 MILFILKFCVYTLFSYGWQFVWLFAQFLLIPIFTVLLVFTAKAVFYLLKLLEAAFTILVLVLIEKLKGVR JQ860350 MILFILKFCVYTLFSYGWQFVWLFAQFLLIPIFTVLLVFTAKAVFYLLKLLEAAFTTLVLISIEKLRGVR LT900503 MILFILKFCVYTLFSYGWQFVWLFAQFLLIPIFTVLLVFTAKAVFYLLKLLEAAFTTLVLILIEKLKGVR AY427798 MIFIVTKFCVYTLFSYGWQFVWLFAQFLLIPIFTVLLVFSAKAVFHILSLLEVTFTTSVLFLVSKVKSFR KR527150 MIFIVVKFCVYTLFSYGWQFVWLFAQFLLIPIFTVLLVYSAKAVFYILSLVEAIFTTFILFLISKVKSLR *:: : *** :***:************::******:*:::.**:*::* *:* *: :: :. :. . MANKYQVIDSLWSETYEYQFAYFGHPYKNVQDLKKAHQRNRAAFVLKYLGPNFQVPAFGPVFRYTTKPGI *******:************ *****:*:*****. ***************.****.****:*** : * * EToV AFKNGAIYLGVSELGTQIHINPLQLFTKFTVTCDEHLVHPVQMDYRVYLECEGSVGERIVQGVSAFERYY AY427798 SFKDGSIYLGVTDFGTQIHINPLQLFTKFAITCPEHLIHPVQMDYRVYLETEGSFGERIVQGVSSFERFY KR527150 SFKDGSIYLGVTDFGTQIHINPLQLFTKFAVTCPEHLIHPVQMDYRVYLETEGSFGERIVQGVSSFERFY JQ860350 TFKDGSIYLGVTDFGTQVHINPLQLFTKFAITCPEHLIHPVQMDYRVYLETEGSVGERIVQGVSAFERYY LC088094 TFKDGSIYLGTTDFGTQVHINPLQLFTKFAVTCPEHLIHPVQMDYRVYLETEGSFGERIVQGVSAFERFY LC088095 TFKDGSIYLGTTDFGTQVHINPLQLFTKFAVTCPEHLIHPVQMDYRVYLETEGSFGERIVQGVSAFERFY LT900503 TFKDGSVYLGTTDFGTQVHINPLQLFTKFAITCPEHLIHPVQMDYRVYLETEGSFGERIVQGVSAFERFY KM403390 TFKDGSIYLGITDFGTQVHINPLQLFTKFAVTCPEHLIHPVQMDYRVYLETEGSFGERIVQGVSAFERFY :**:*::*** :::***:***********::** ***:************ ***.*********:***: * EToV PKKQLCGAITADPFNFDWERNIHNYYFTRNTLRYGTKYYQLCGKHLIERSSGIERTGILPRILSECQLPI AY427798 PKRQLCGVIIDDPFSFDWAGNIHNYYFTRNVLRYGTKLYQVNGNRLIERSSGIERSDVLPRILSECQLPI KR527150 PKRQLCGIIIDDPFSFDWAGNIHNYYFTRNVLRYGTKLYQVNGNRLIERSSGIERSDILPRILSECQLPI JQ860350 PRKQLCGTIVNDPFTFDWAGNIHNYYFTRNVLRYGTKLYQVNGNKLIERCSGIERSDILPRILSECQLPI LC088094 PKRQLCGSIVSDPFTFDWAGNIHNYYFTRNVLRYGTKLYQVNGNKLIERCSGIERSDILPRILSECQLPV LC088095 PKRQLCGSIVSDPFTFDWAGNIHNYYFTRNVLRYGTKLYQVNGNKLIERCSGIERSDILPRILSECQLPI LT900503 PKRQLCGTIVNDPFTFDWAGNIHNYYFTRNVLRYGTKLYQVNGNKLIERCSGIERSDILPRILSECQLPI KM403390 PKRQLCGTIVNDPFTFDWAGNIHNYYFTRNVLRYGTKLYQVNGNKLIERCSGIERSDILPRILSECQLPI *..**** * ***.*** **********.****** **: *:.****.*****:.:***********:

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