Author: Alejandro A Schäffer; Eneida Hatcher; Linda Yankie; Lara Shonkwiler; J Rodney Brister; Ilene Karsch-Mizrachi; Eric P Nawrocki
Title: VADR: validation and annotation of virus sequence submissions to GenBank Document date: 2019_11_22
ID: besvz92f_61
Snippet: The copyright holder for this preprint (which was not peer-reviewed) is the author/funder. . https://doi.org/10.1101/852657 doi: bioRxiv preprint or 3' end (that either begin 3' of the start of the nonstructural polyprotein CDS or end 5' of the end of the VP2 CDS) because VAPiD is not designed to handle incomplete sequences. This leaves 150 of the original 200 sequences in the NC set for defining FP and FN rates. We assert that the 129 sequences .....
Document: The copyright holder for this preprint (which was not peer-reviewed) is the author/funder. . https://doi.org/10.1101/852657 doi: bioRxiv preprint or 3' end (that either begin 3' of the start of the nonstructural polyprotein CDS or end 5' of the end of the VP2 CDS) because VAPiD is not designed to handle incomplete sequences. This leaves 150 of the original 200 sequences in the NC set for defining FP and FN rates. We assert that the 129 sequences that pass all three programs are all positives, which is reasonable for our specific purpose of comparing only these three programs.
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