Author: Rohan Maddamsetti; Daniel T. Johnson; Stephanie J. Spielman; Katherine L. Petrie; Debora S. Marks; Justin R. Meyer
Title: Viral gain-of-function experiments uncover residues under diversifying selection in nature Document date: 2018_1_3
ID: gqhlw20n_9
Snippet: The copyright holder for this preprint (which was not peer-reviewed) is the author/funder. To analyze J protein evolutionary dynamics in more depth, we built maximum-likelihood phylogenetic trees for J ( Figure 2C ) and its specificity region ( Figure 2D ). The trees are very different (normalized Robinson-Foulds distance = 0.94 out of 1.00), indicating that recombination has caused the history of the specificity region to differ from the history.....
Document: The copyright holder for this preprint (which was not peer-reviewed) is the author/funder. To analyze J protein evolutionary dynamics in more depth, we built maximum-likelihood phylogenetic trees for J ( Figure 2C ) and its specificity region ( Figure 2D ). The trees are very different (normalized Robinson-Foulds distance = 0.94 out of 1.00), indicating that recombination has caused the history of the specificity region to differ from the history of the rest of the protein.
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